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Java-based tool for analysis of gene expression data.



EXPANDER 6.5.1 facilities

Vendor`s Webhttp://www.tau.ac.il
Tel-Aviv University webshot
OSWindows 2000, Windows XP, Windows Vista, Linux
Limitationsnot specified
Actualizedmore than year ago
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EXPANDER manufacturer description

EXPANDER 6.5.1 (EXpression Analyzer and DisplayER) is a java-based tool for analysis of gene expression data. It seamlessly integrates in one package all analysis steps, including:
- data preprocessing and normalization
- identification of differential genes
- clustering and biclustering;
- down-stream enrichment analyses of:
  - GO functional categories
  - TF binding sites in promoter regions
  - microRNA sites in 3`-UTRs and
  - chromosomal locations
- network-based analysis of the expression data.

EXPANDER Analysis, modeling, design & construction provides support for analysis of human, mouse, rat, chicken, fly, zebrafish, C. elegans, yeast (S. servicia and s. Pombe), arabidopsis, tomato, listeria and E. coli.
Highlights of Expander5:

  • SAM algorithm for gene (probes) filtration.

  • MATISSE algorithm for network-based detection of gene modules.

  • Interface to the SPIKE software for signalling network-based group analysis.

  • Chromosomal location enrichment analysis

  • FAME algorithm for microRNA targets enrichment analysis of gene groups.

  • Gene chromosomal position display

  • Automatic download of organism-specific data

  • Ability to load .CEL files from new Affymetrix chips.

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Free download EXPANDER 6.5.1
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EXPANDER categories

microRNA motif finding

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