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AssociationViewer 2.0

Display SNPs and their p-values in a genetic context

 

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AssociationViewer 2.0 facilities

Vendor
Vendor`s Webhttp://www.isb-sib.ch
Swiss Institute of Bioinformatics webshot
OSWindows 2000, Windows XP, Windows Vista, Windows 7, Mac OS, Linux
Limitationsnot specified
Actualizedmore than year ago
Downloads695
LocalizedEnglish
LicenseOpen source
SnapshotAssociationViewer snapshot
Snapshot of AssociationViewer

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AssociationViewer manufacturer description

AssociationViewer 2.0 is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
Some of the main features are (the list may change in the future):

  • Display SNPs and their p-values in a genetic context, similar to usual genome browsers

  • Automatically download supplementary information from Ensembl/Biomart

  • Display Hapmap LD plots

  • Print and export the display to various data formats

  • Import external data file such as BED or Wiggle as supplementary tracks

  • Does not require to have a local copy of any data or data source, except for the primary file of SNPs and their respective p-values

  • Users can scroll and browse through their data in real time

  • Small in size (AssociationViewer Tools & editors itself is less than 800 KB, less than 5 MB with the required libraries)

  • Downloaded data is kept in a cache locally for faster access

  • Due to the cache, memory requirement is reasonable

free download AssociationViewer 2.0QUICK DOWNLOAD
Free download AssociationViewer 2.0
Free softwareFREE SOFTWARE

Freeware is computer software that is available for use at no cost or for an optional fee.

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AssociationViewer video tutorials

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AssociationViewer categories

AssociationViewer, genetic content, SNP

What is new in 2.0 changeinfo log

  • bugs fixed:
    • 2944537 : BED track stacked mode was incorrectly displayed.
    • 2941083 : BED track display was out of range.
    • 2887226 : zoom when double-clicking was disabled.
  • features implemented:
    • 3028826 : support for Mouse is now built-in.
    • 3029454 : support for command-line arguments (internal use only).
    • 3032044 : local and network files are loaded in the same way (network files are not saved anymore in the cache directory).
    • 3032046 : gzip files are supported (but not zip).
    • 3036990 : plugin framework implemented.
    • 3038684 : most of the SNP related features are hidden when using -d command-line flag.
    • 1994839 : tracks in the track management panel can be moved using drag and drop.
  • 20.01.2010: version 1.7 is online As usual, several new features and bug fixes.
    • bugs fixed:
      • 2896502 : memory selection in the Java Web Start link was not working under MacOS X.
      • 2884539 : incorrect vertical scale for wiggle tracks.
      • 2882320 : some external links were broken.
    • features implemented:
      • 2082477 : connection to the latest version of Ensembl.
      • 2590067 : vertical autoscale for score tracks.
      • 2590076 : bed lines in a track can be stacked.
      • 2887046 : multiple files of the same type can be loaded at the same time.
      • 2891969 : DNA sequence for a specific region can be displayed.
      • 2900421 : external link to KEGG added.

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