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RooTrak 0.3.1

A tool for analysing X-ray micro CT scans of roots in soil.

 

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RooTrak 0.3.1 facilities

Vendor
Vendor`s Webhttp://www.cpib.ac.uk
The Centre for Plant Integrative Biology webshot
OSWindows XP, Windows Vista, Windows 7, Windows 8
Limitationsnot specified
Actualizedmore than year ago
Downloads1051
LocalizedEnglish
LicenseOpen source
SnapshotRooTrak snapshot
Snapshot of RooTrak

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RooTrak manufacturer description

X-ray Micro Computed Tomography (µCT) is an invaluable tool for visualizing plant root systems within their natural soil environment. However, variations in the X-ray attenuation values of root material and the overlap in attenuation values between roots and soil caused by water and organic materials represent major challenges to data recovery. RooTrak 0.3.1 views µCT data as a sequence of images through which root objects appear to move as the x-y cross-sections are traversed along the z-axis of the image stack. RooTrak Health exploits multiple, local models of root appearance, each built while tracking a specific segment, to identify new root material. It requires minimal user interaction and is able to adapt to changing root density estimates. The model-guided search for root material arising from the adoption of a visual tracking framework makes RooTrak less sensitive to the natural ambiguity of X-ray attenuation data than previous approaches. RooTrak download can successfully extract a range of root architectures from the surrounding soil and promises to facilitate future root phenotyping efforts.
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RooTrak categories

visualization, soil, roots, X-ray micro CT

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