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Cytoscape 3.0.2

Cytoscape is an open source bioinformatics software platform.



Cytoscape 3.0.2 facilities

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Cytoscape webshot
OSWindows 2000, Windows XP, Windows Vista, Windows 7, Mac OS, Linux
Limitationsnot specified
Actualizedmore than year ago
LicenseOpen source
SnapshotCytoscape snapshot
Snapshot of Cytoscape

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Cytoscape manufacturer description

Cytoscape 3.0.2 is an open source bioinformatics software platform for  visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data.   Although Cytoscape Network information & monitoring was originally designed for biological research, now it is a general platform for complex network analysis and visualization.   Cytoscape download core distribution provides a basic set of features for data integration and visualization.
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Cytoscape categories

expression, gene, visualization, interaction network, genetic, protein interaction, bioinformatics, graph, software, Cytoscape

What is new in 3.0.2 changeinfo log

Java Versions You can run Cytoscape 3 on Java 6 or 7. However, there are several problems if you use OpenJDK. Please use Oracle JRE/JDK or Apple Java Virtual Machine. Proxy Settings On Linux, on the proxy configuration dialog box, fonts are clipped and messages are truncated. File Encoding On all platforms, all Cytoscape session files are now encoded in UTF-8 instead of the native language encoding. This makes session files portable between workstations in all locales. Users in Japan, Korea, and China are most affected – existing v3.0.0 or v2.x session files must be translated to UTF-8 using a platform-dependent editor (which most users are already using for this purpose). Users in Europe and the Americas are affected, too, if they use characters beyond the standard ANSI 128 – they can translate to UTF-8 using a platform-dependent editor (e.g., Notepad for Windows). Conflict with Older Versions On all platforms, users installing Cytoscape directly from a ZIP or TAR file should manually clear the Cytoscape cache by deleting the CytoscapeConfiguration folder in the user’s home directory. Internationalization (PDF Export) For Japanese, Korean, and Chinese users, rendering a network to a PDF file can result in loss of labeling information in the PDF. As a workaround, users can generate any type of image file and use the image file instead.

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